The Best Healthy Pumpkin Muffin Recipe for Fall: Easy, Gluten-Free, and Delicious

Enjoy fall with this easy, gluten-free, healthy pumpkin muffin recipe! It’s the perfect healthy treat for cozy mornings or snacks.

There’s just something about fall that makes me crave warm, comforting foods. One of my favorite ways to embrace the season is by baking a batch of healthy pumpkin muffins.

This recipe is a family favorite, especially when my daughter, Madison, joins me in the kitchen. She loves to mix the ingredients and, of course, sneak a taste of the batter!

Not only are they delicious, but they’re also packed with wholesome ingredients. Plus, they’re gluten-free and free of refined sugar!

This recipe is inspired by the ingredients in Simple Mills pumpkin muffins, so it’s super clean and guilt-free. Let’s dive into why these muffins are special and why now is the perfect time to bake them.

Why Pumpkin Muffins Are the Perfect Fall Recipe

Fall is the season of pumpkins, and for good reason. Pumpkin is loaded with essential nutrients like fiber, Vitamin A, and antioxidants, making it a great superfood to include in your diet.

I love making pumpkin muffins because they bring together all the cozy fall flavors—like cinnamon, nutmeg, and cloves—while offering a healthy twist on traditional muffins.

Why it’s the Best Time to Make Pumpkin Muffins:

Pumpkins are in season: Fall is the peak time for pumpkins, meaning they’re fresh, affordable, and widely available.
Warm, cozy flavors: The spices that pair perfectly with pumpkin—like cinnamon, ginger, and nutmeg—bring a warm, aromatic essence to the kitchen. The smell alone is worth it!
Perfect for gatherings: Pumpkin muffins are an ideal snack for family breakfasts, after-school treats, or as a healthy option for fall get-togethers.

I can’t tell you how much I love these pumpkin muffins—seriously, they’re the perfect balance of sweet and spicy, and I could eat them all day! They also make for a great grab-and-go breakfast on busy mornings.

The Health Benefits of These Pumpkin Muffins

Unlike traditional baked goods that can be packed with sugar and unhealthy fats, this recipe uses clean, simple ingredients. Here’s why these muffins are a great healthy option:

Gluten-Free Goodness: The almond flour and coconut flour keep these muffins gluten-free while adding protein and fiber.
Naturally Sweetened: I use coconut sugar or maple syrup instead of refined sugar, so these muffins are naturally sweet without any guilt.
Healthy Fats: Using coconut oil provides healthy fats, and it keeps the muffins super moist.
Packed with Nutrients: Pumpkin is full of Vitamin A, which is great for eye health, immune function, and skin. Plus, it’s loaded with fiber!

Easy Healthy Pumpkin Muffin Recipe

Here’s the recipe I use to make these delicious muffins at home, and it’s perfect if you want a healthier option that still tastes great.

Ingredients:

1 cup pumpkin puree (canned or homemade)
2 eggs
1/3 cup coconut sugar or maple syrup
1/4 cup coconut oil, melted (or avocado oil)
1 tsp vanilla extract
1 1/2 cups almond flour
1/2 cup arrowroot flour
1/4 cup coconut flour
1 tsp baking soda
1 tsp cinnamon
1/2 tsp nutmeg
1/4 tsp ginger
1/4 tsp cloves
1/4 tsp salt

Instructions:

Preheat the oven to 350°F (175°C). Line a muffin tin with paper liners or lightly grease with oil.
In a large mixing bowl, whisk together the pumpkin puree, eggs, coconut sugar (or maple syrup), melted coconut oil, and vanilla extract until well-combined.
In another bowl, whisk together the almond flour, arrowroot flour, coconut flour, baking soda, cinnamon, nutmeg, ginger, cloves, and salt.
Slowly add the dry ingredients into the wet ingredients, stirring until just combined. Be careful not to overmix to keep the muffins light.
If you want, fold in chopped pecans, dark chocolate chips, or pumpkin seeds for extra texture.
Spoon the batter into the muffin cups, filling each about 3/4 full.
Bake for 18-22 minutes, or until a toothpick inserted into the center of a muffin comes out clean.
Let the muffins cool in the tin for 5 minutes before transferring them to a wire rack to cool completely.

Why This Healthy Pumpkin Muffin Recipe is Perfect for Fall

With pumpkins in season and the weather cooling down, now is the perfect time to make these healthy muffins.

They’re easy to whip up, packed with nutrients, and bring the cozy, comforting flavors of fall into your home. Whether you’re enjoying one for breakfast, as a snack, or even as a light dessert, these muffins are a great way to celebrate the season.

So, grab a pumpkin, gather your ingredients, and get ready to enjoy one of the best parts of fall: delicious, healthy pumpkin muffins that you can feel good about eating!

What’s your favorite fall treat? If you give these muffins a try, let me know how they turn out! I’d love to hear any tweaks you make.

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